Publications

Electronic Health Record-Based Phenotyping for Obsessive-Compulsive Disorder: Algorithm Development and Multicenter Validation Study

Bo Wang, Tyne W Miller-Fleming, Dongmei Yu, Donald Hucks, Emily Gantz, Rebecca Johnston, Angela Maxwell-Horn, Nancy Cox, James Sutcliffe, Carol A Mathews, others

JMIR Mental Health

• EHR Phenotyping
• Psychiatry

DOI PDF

EviDAG: Auditable Causal DAG Authoring with Biomedical Literature

Yi-han Sheu, Michael R Steigman, Yu Zhou, Bo Wang, Fan-Yu Yen, Jordan W Smoller

Accepted at EMNLP 2026 System Demonstrations Track

• Clinical NLP

DOI PDF

Extracting Social Determinants of Health From Electronic Health Records: Development and Comparison of Rule-Based and Large Language Model Methods

Bo Wang, Dia Kabir, Cheryl R. Clark, Karmel W. Choi, Jordan W. Smoller

JMIR Medical Informatics

• Clinical NLP
• Large Language Models

DOI PDF

Multi-Criteria Validation of LLM-Inferred Depression Severity from Outpatient Psychiatry Notes

Mihael Cudic^*, William Meyerson^*, Bo Wang, Qingqing Yin, Pratik N Khadse, Taylor Burke, Chris J Kennedy, Jordan W Smoller

* Equal contribution

medRxiv

• Large Language Models
• Psychiatry

DOI

Prediction of early-onset bipolar using electronic health records

Bo Wang, Yi-Han Sheu, Hyunjoon Lee, Robert G. Mealer, Victor M. Castro, Jordan W. Smoller

Journal of Child Psychology and Psychiatry

• Clinical Prediction
• Psychiatry

DOI PDF

Continuous time and dynamic suicide attempt risk prediction with neural ordinary differential equations

Yi-Han Sheu^*, Jaak Simm^*, Bo Wang^*, Hyunjoon Lee, Jordan W. Smoller

* Equal contribution

npj Digital Medicine

• Clinical Prediction
• Longitudinal Modeling
• Neural ODEs

DOI PDF

Sexual Trauma, Polygenic Scores, and Mental Health Diagnoses and Outcomes

Allison M. Lake, Yu Zhou, Bo Wang, Ky'Era V. Actkins, Yingzhe Zhang, John P. Shelley, Anindita Rajamani, Michael Steigman, Chris J. Kennedy, Jordan W. Smoller, Karmel W. Choi, Nikhil K. Khankari, Lea K. Davis

JAMA Psychiatry

• Genetics

DOI

Development and validation of electronic health record-based ascertainment of obsessive-compulsive disorder cases and controls

Bo Wang, Tyne W Miller-Fleming, Dongmei Yu, Donald Hucks, Emily Gantz, Rebecca Johnston, Angela Maxwell-Horn, Nancy Cox, James Sutcliffe, Carol A Mathews, others

medRxiv

• EHR Phenotyping
• Psychiatry

DOI

A longitudinal multi-modal dataset for dementia monitoring and diagnosis

Dimitris Gkoumas, Bo Wang, Adam Tsakalidis, Maria Wolters, Matthew Purver, Arkaitz Zubiaga, Maria Liakata

Language Resources and Evaluation

• Dementia
• Longitudinal Modeling

DOI PDF

Subtle variation in sepsis-III definitions markedly influences predictive performance within and across methods

Samuel N. Cohen, James Foster, Peter Foster, Hang Lou, Terry Lyons, Sam Morley, James Morrill, Hao Ni, Edward Palmer, Bo Wang, Yue Wu, Lingyi Yang, Weixin Yang

Scientific Reports

• Clinical Prediction

DOI PDF

Template-based abstractive microblog opinion summarization

Iman Munire Bilal, Bo Wang, Adam Tsakalidis, Dong Nguyen, Rob Procter, Maria Liakata

Transactions of the Association for Computational Linguistics (TACL)

• Social NLP

DOI PDF

BIGBIO: a framework for data-centric biomedical natural language processing

Jason Alan Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Ruisi Su, Samuele Garda, Sunny MS Kang, Stella Biderman, Matthias Samwald, Stephen H. Bach, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Perinan, Théo Gigant, Patrick Haller, Jenny Chim, Jose Posada, John Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Broad, Yanis Labrak, Shlok S Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova Moral, Benjamin Beilharz

The 36th Conference on Neural Information Processing Systems (NeurIPS)

• Clinical NLP
• Large Language Models

PDF

Dataset debt in biomedical language modeling

Jason Fries, Natasha Seelam, Gabriel Altay, Leon Weber, Myungsun Kang, Debajyoti Datta, Ruisi Su, Samuele Garda, Bo Wang, Simon Ott, others

BigScience – Workshop on Challenges & Perspectives in Creating Large Language Models

• Clinical NLP
• Large Language Models

DOI PDF

Natural Language Processing markers in first episode psychosis and people at clinical high-risk

Sarah E Morgan, Kelly Diederen, Petra E Vértes, Samantha HY Ip, Bo Wang, Bethany Thompson, Arsime Demjaha, Andrea De Micheli, Dominic Oliver, Maria Liakata, others

Translational psychiatry

• Clinical NLP
• Psychiatry

DOI PDF

Evaluation of thematic coherence in microblogs

Iman Munire Bilal, Bo Wang, Maria Liakata, Rob Procter, Adam Tsakalidis

The 59th Annual Meeting of the Association for Computational Linguistics (ACL)

• Social NLP

DOI PDF

Modelling paralinguistic properties in conversational speech to detect bipolar disorder and borderline personality disorder

Bo Wang, Yue Wu, Nemanja Vaci, Maria Liakata, Terry Lyons, Kate EA Saunders

IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)

• Psychiatry
• Speech

Information extraction from swedish medical prescriptions with sig-transformer encoder

John Pougué-Biyong, Bo Wang, Terry Lyons, Alejo Nevado-Holgado

Proceedings of the 3rd clinical natural language processing workshop

• Clinical NLP

Learning to Detect Bipolar Disorder and Borderline Personality Disorder with Language and Speech in Non-Clinical Interviews

Bo Wang, Yue Wu, Niall Taylor, Terry Lyons, Maria Liakata, Alejo J Nevado-Holgado, Kate EA Saunders

Proc. Interspeech 2020

• Psychiatry
• Speech